#1 could be the TCM needs the latest service update (re-flash).
The answer to question #2 may be found by scrolling down to letter Q, here: http://www.allisontransmission.com/service/faq/index.jsp?CategoryID=11#100
The answer to question #2 may be found by scrolling down to letter Q, here: http://www.allisontransmission.com/service/faq/index.jsp?CategoryID=11#100